SeqKit is a fast and versatile command-line toolkit for processing FASTA and FASTQ files. It is widely used for bioinformatics tasks, offering various functions, including sequence statistics, sear...

Trimmomatic is a powerful, fast, and flexible command-line tool designed for trimming and filtering high-throughput sequencing data, particularly Illumina FASTQ files.

The SPAdes toolkit is a powerful bioinformatics tool for genome assembly from next-generation sequencing data. It is widely used for bacterial genomes and is compatible with Illumina and other sequ...

Comprehensive SPAdes command-line reference: Advanced genomic assembly toolkit with flexible input options, specialized assembly modes, and performance optimization flags for researchers conducting...

FastUniq is a command-line tool and application designed for de novo deduplication of paired-end sequencing reads in FASTQ format . It provides a lightweight and efficient solution for preprocessin...

Comprehensive guide to SPAdes genome assembly input: FASTQ file preparation, quality control, and preprocessing for accurate sequencing data analysis across single-cell, paired-end, and metagenomic...